Deduplicate sender detection — 70+ duplicate noreply@github.com rows #7

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toasterson wants to merge 9 commits from claude/wi-019e535b-deduplicate-sender-detection-70-duplicat into main
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Draft PR for Anima work item Deduplicate sender detection — 70+ duplicate noreply@github.com rows (019e535b-0b68-7e72-8b44-f9a0bbf49200).

This PR is a scaffold opened by anima-triage. The implementation worker picks it up from here.

Close or mark ready manually once the implementation lands.

Draft PR for Anima work item **Deduplicate sender detection — 70+ duplicate noreply@github.com rows** (`019e535b-0b68-7e72-8b44-f9a0bbf49200`). This PR is a scaffold opened by `anima-triage`. The implementation worker picks it up from here. - Marker: [`.anima/wip/019e535b.md`](.anima/wip/019e535b.md) - Current phase: `triaged` Close or mark ready manually once the implementation lands.
wip: triage Deduplicate sender detection — 70+ duplicate noreply@github.com rows
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Parity first: most of WI-5 is already satisfied on main and did not need
rebuilding.

  - "check for existing person by email before creating one" — add_person
    already looks up person_emails and returns the existing person.
  - "upsert pattern" — achieved equivalently by a transactional
    check-then-insert, so a failed person_emails insert can no longer strand
    a people row.
  - unique constraint on the email column — present since the initial commit
    (m20260427_000001_init), so every deployed database already has it.

The earlier attempt on PR #7 re-added that unique constraint as a new
migration, which is redundant against main.

What was genuinely missing is the "source" half of the work item's enrichment
clause. `AgentAction::PeopleUpsertPending` carries a `source`, the executor
logs it, and then `add_person` threw it away and hardcoded "manual" for every
caller. Every automatically detected sender was therefore recorded as though a
human had typed it, and the distinction the column exists to hold was lost.

  - add_person now takes an EmailSource. The executor's notification path
    records Auto; the person.add tool records Manual.
  - Enrichment on an address we already hold is monotonic: display_name is
    still only filled when absent, and source is upgraded auto -> manual when
    a human registers an address we had only inferred. It is never downgraded
    — a later automatic sighting must not erase that a human vouched for it.
  - source_label() is the single stored spelling, so the insert path and the
    enrichment comparison cannot drift.

On the remaining duplicate cleanup: WI-5's own triage left "should the
migration actively delete or merge the existing duplicates, and how should we
reassign their foreign keys?" as an open question, and it was never answered.
PR #7 answered it unilaterally with

    DELETE FROM people WHERE id NOT IN (SELECT DISTINCT person_id FROM person_emails)

against production. That is a data-loss decision, not an implementation
detail, so it is deliberately not taken here.

Instead `person.duplicates` reports the population so the decision can be made
on real numbers: addresses claimed by more than one people row (possible
because people.primary_email carries no unique constraint, even though
person_emails.email does), and people rows with no person_emails entry — the
strays from the historical insert order, which the current transactional
add_person can no longer create. The tool is read-only and takes no arguments;
it performs no merge and no delete. Only person_emails references people, so a
future merge has exactly one table to reassign.

Tests (5 new, all passing): the stored source labels are pinned as wire values
because the enrichment path compares against them; the upgrade rule is
asserted in all four directions including the two no-ops and the forbidden
downgrade; the report round-trips through the MCP surface; the census is
advertised argument-free; person.add registers as Manual.

Verified: cargo test -p sia-store -p sia-mcp --lib 32/32; cargo clippy
-p sia-store -p sia-mcp -p sia-agent --all-targets clean; cargo fmt --all
--check clean; cargo check --workspace clean.

No migration, no schema change, no production data touched.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
WI-5: merge PR #7 head 2b902620 into the recovery branch
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Additive merge putting PR #7's original head into this branch's ancestry so
the canonical work-item branch can fast-forward without a force push and
without discarding the PR's history.

The final tree is deliberately the reconciled one:

- ~2790 of PR #7's ~3257 added lines are .anima-exec/ runner telemetry and a
  vendored anima-proto stub, not the feature. .anima-exec/ is now ignored on
  the WI-6 branch so this cannot recur.
- Its migration re-added a unique constraint on the email column that main has
  carried since the initial commit, so it is redundant against main.
- Its data step, DELETE FROM people WHERE id NOT IN (...), is a production
  data-loss decision that WI-5's own triage left as an open question. It is
  deliberately not carried forward; person.duplicates reports the population
  instead so the decision can be made on evidence.
- The prevention half PR #7 aimed at is already on main (transactional
  check-then-insert in add_person). What remained was the source-provenance
  clause, implemented here.

Net diff against current main is unchanged by this merge.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Native CI: add .solstice/job.sh and share one check script with Forgejo
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`get_project_ci_status` reported `resolvable: false` for Sia — no
`default_ci_steps` and no `.solstice/job.sh` — so every native dispatch
failed at config resolution before running anything.

That failure is not neutral. anima-server's solstice.rs routes it to
`handle_config_failure`, which parks the work item with
`ParkedReason::CiConfigUnresolvable`. The ABSENCE of this file reads as
"this work item's CI is broken" and parks real work. akh-medu learned this
the expensive way (8/8 native dispatches failed, the WI 1/2/3 series parked)
and its job.sh states the rule: a missing file must not read as "the code is
red". Sia had CI only on the Forgejo-Actions lane, so the native lane — the
one Anima's exact-head gate reads — had never produced a verdict at all.

One definition of the checks, two lanes
---------------------------------------
scripts/ci-checks.sh is now the only place the cargo commands are written.
Both .solstice/job.sh and .forgejo/workflows/ci.yml call it; neither re-lists
them. akh-medu's rule is that a native verdict must never be red for work the
Actions lane would call green, because the disagreement parks work items on
phantom failures. Two inline copies drift the first time someone edits one;
sharing the script makes that structurally impossible rather than a reviewer's
responsibility.

job.sh only provisions. It deliberately differs from the Anima/akh-medu
scripts in two places:

- It does not assume passwordless sudo. Those scripts call `sudo apt-get`
  unconditionally because their image grants it; a runner without sudo would
  fail with a bare "sudo: command not found" that classifies as a code
  failure and parks the item. Privilege is resolved once, only missing
  packages are installed, and the no-privilege case exits with a message
  naming the packages and the reason.
- It does not `rm -rf ../anima`. The workflow did, and on a persistent or
  shared runner that deletes a checkout the job does not own. An existing
  sibling is reused; a non-git path there is refused rather than removed.
  The resolved revision is always logged so an upstream anima-proto change
  is attributable. ANIMA_SIBLING_REV pins a run without freezing CI to a
  revision the shipped image does not use.

protoc keeps ci.yml's pinned 25.3 release, since Ubuntu's 3.12 rejects
anima-proto's proto3 `optional` fields, and installs into the checkout so it
needs no privileges. The build is debug: release codegen is what OOM-killed
rustc on the Solstice VMs for akh-medu, and an OOM reads as red on healthy
code. Sia's release build is still covered by the `docker` job on push to
main.

Validation
----------
scripts/test-ci-job.sh replaces every external command with a logging stub and
asserts on the control flow — the branches that only execute on a runner in an
unusual state, i.e. never until the day they matter. 10 scenarios, 36
assertions, all passing; it needs no toolchain and runs in seconds, so it is
wired into ci-checks.sh and guards the CI definition on both lanes.

It earned its keep immediately, catching three defects before any runner saw
the script: `"${profile_args[@]}"` on an empty array is an unbound-variable
error under `set -u` on bash < 4.4, so the script would have worked on the
runner but not locally, defeating the point of sharing it; the openssl probe
hardcoded /usr/include/openssl/ssl.h and reported a false "missing" on any
other layout, triggering a pointless privileged install; and the harness's own
no-sudo case was inheriting the host's cached sudo credentials, leaving the
no-privilege branch untested exactly where it was most likely to be wrong.

No application change: no Cargo.toml edit, no dependency version change.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Merge the native CI job script so this head can produce a CI verdict
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Anima's native dispatch reads .solstice/job.sh from the TESTED COMMIT, not
from main (solstice.rs handle_config_failure names the commit it probed). So
until this branch carries the file, every native dispatch against this head
fails at config resolution and parks the work item with
ParkedReason::CiConfigUnresolvable — the head can never go green no matter
how healthy the code is.

Merging the CI branch (PR #13) additively lets the exact-head CI gate
actually run here. It adds .solstice/job.sh, scripts/ci-checks.sh and the
stubbed harness, and switches .forgejo/workflows/ci.yml to call the shared
script. No application code is touched and nothing on this branch is
modified — the merge is clean with zero conflicts.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Native CI: fix four blockers found in review of e5ead22
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All four were real. Reproduced each before fixing.

1. The install died as root. `$SUDO DEBIAN_FRONTEND=noninteractive apt-get`
   looks like an assignment prefix but is not one: bash decides that from the
   text BEFORE expansion, and the first word is `$SUDO`. Once that expands to
   nothing — i.e. running as root, the case that should always work — the
   assignment becomes the command name:

       $ SUDO=""; $SUDO DEMO_ONLY=1 true
       bash: DEMO_ONLY=1: command not found   (rc=127)

   Routed through `env`, which is a real command in both shapes. The harness
   now exercises root explicitly via an `id` stub rather than only covering
   sudo/non-root, so the escalation-free path has real coverage.

2. A git worktree's `.git` is a FILE holding a gitdir pointer, so `[ -d .git ]`
   rejected a perfectly valid shared worktree — and the next branch then
   refused to run at all. This checkout is itself a worktree, so the script
   would have rejected the very tree it was written in. Now asks git
   (`rev-parse --is-inside-work-tree`) and confirms the path is that
   worktree's ROOT by comparing realpaths, so a subdirectory of an unrelated
   repo above it is still refused — non-destructively.

3. ANIMA_SIBLING_REV claimed a pin it never enforced: it was only applied on
   the clone path, so with an existing checkout the requested revision was
   silently ignored and the verdict was attributed to a revision that was
   never built. Now validated against the existing checkout and REFUSED on
   mismatch, without touching a checkout this job does not own. An unknown rev
   is likewise refused rather than fetched into it.

   ANIMA_SIBLING_DIR is gone. It was misleading: cargo reads the override path
   from the workspace [patch] table, so pointing the variable elsewhere
   provisioned a directory cargo would never look at while the build still
   failed on the real path. The sibling location is now derived from
   Cargo.toml, which is the only thing that actually decides it, and a missing
   [patch] path fails loudly instead of guessing.

4. `clippy --workspace --all-targets -- -D warnings` was stricter than the
   ci.yml it replaced (libs/bins only). Pulling tests, benches and examples
   into a -D warnings gate for the first time risks an unrelated baseline
   failure landing as a red verdict on unrelated work — the phantom-failure
   park this work item exists to stop. Restored to the previously-verified
   scope. Widening is a separate change that needs a clean baseline run and
   then moves both lanes together.

Also fixes unbounded recursion introduced when the harness was wired into
ci-checks.sh: the harness runs job.sh, which execs ci-checks.sh, which ran the
harness. Guarded with CI_SKIP_JOB_HARNESS, which the harness sets for its
children, and the guard itself is now covered.

Harness: 18 scenarios, 62 assertions, all passing. New fixtures are real, not
mocked around — an actual shared worktree created with `git worktree add`, an
actual non-root checkout, actual commit SHAs for the pin cases, and a real
Cargo.toml with a [patch] table so the derivation runs the same code path the
runner takes.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Merge the reviewed native CI fixes so this head carries the corrected script
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Picks up the four blockers found in review of e5ead22: the install died as
root (an env assignment after an empty $SUDO becomes the command name), a git
worktree's .git is a file so valid shared worktrees were rejected,
ANIMA_SIBLING_REV claimed a pin it never enforced on an existing checkout, and
the clippy gate had been widened beyond the scope ci.yml previously verified.

Additive: no application code on this branch is modified.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
toasterson changed title from WIP: Deduplicate sender detection — 70+ duplicate noreply@github.com rows to Deduplicate sender detection — 70+ duplicate noreply@github.com rows 2026-09-22 10:37:46 +00:00
CI: make the job-script harness hermetic in command visibility and identity
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Native Linux CI on 255b3fc failed 56 passed / 6 failed
(request 982fb0cb-eb22-46d6-8dc1-2076e0e4e19c). The harness was not hermetic,
so it asserted against the host instead of the fixture, and the same suite
passed on macOS and failed on the CI container.

Two leaks, both real.

PATH fell through to /usr/bin:/bin. "Missing pkg-config" was therefore not
missing on any image that ships it, so scenarios 4, 5 and 11 silently
exercised the already-provisioned path rather than the install branches they
name. macOS has no /usr/bin/pkg-config, Debian does — hence the split.

Identity was inherited. job.sh branches on `id -u`, and an `id` stub was
installed only for the root scenario. On a container running as root every
"non-root" scenario took the root path, leaving the no-privilege branch
untested exactly where it was most likely to be wrong.

Fixes, in the harness only — job.sh's provisioning semantics are unchanged:

  - $BIN is now the ENTIRE PATH under test. Every legitimately-needed real
    tool is linked into it explicitly (bash sh env git sed awk grep cut head
    sort uniq mkdir rm cp ln chmod cat true false dirname basename touch wc),
    and nothing else is reachable, so absence is real absence.
  - `id` is stubbed for EVERY mode from the scenario's declared identity
    (root -> 0, otherwise 1000), never inherited from the host.

No assertion was dropped or weakened; the six that were failing now exercise
what their names claim. A new scenario 19 guards the leak itself — that PATH
under test is exactly the sandbox bin, that an unprovided command is absent,
that host pkg-config is unreachable, that identity is the declared one, and
that real tools are still reachable — so this cannot regress silently into
"passes on the developer's machine".

Proof, same container both ways (debian:bookworm-slim, pkg-config installed):

  pre-fix  (255b3fc harness), uid 0 : passed: 56   failed: 6
                                      exactly the six CI reported
  post-fix (this commit),     uid 0 : passed: 68   failed: 0
  post-fix (this commit),  uid 1000 : passed: 68   failed: 0
  post-fix, macOS host              : passed: 68   failed: 0

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Merge the hermetic-harness CI fix
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Native Linux CI on the CI branch failed 56/6 because the job-script harness
was not hermetic: PATH fell through to /usr/bin so "missing pkg-config" was
not missing on Debian, and `id` was inherited so non-root scenarios ran as
root. Both are fixed in the harness only; job.sh's provisioning semantics are
unchanged.

Additive: no application or packaging change on this branch is modified.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
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git fetch -u origin claude/wi-019e535b-deduplicate-sender-detection-70-duplicat:claude/wi-019e535b-deduplicate-sender-detection-70-duplicat
git switch claude/wi-019e535b-deduplicate-sender-detection-70-duplicat

Merge

Merge the changes and update on Forgejo.

Warning: The "Autodetect manual merge" setting is not enabled for this repository, you will have to mark this pull request as manually merged afterwards.

git switch main
git merge --no-ff claude/wi-019e535b-deduplicate-sender-detection-70-duplicat
git switch claude/wi-019e535b-deduplicate-sender-detection-70-duplicat
git rebase main
git switch main
git merge --ff-only claude/wi-019e535b-deduplicate-sender-detection-70-duplicat
git switch claude/wi-019e535b-deduplicate-sender-detection-70-duplicat
git rebase main
git switch main
git merge --no-ff claude/wi-019e535b-deduplicate-sender-detection-70-duplicat
git switch main
git merge --squash claude/wi-019e535b-deduplicate-sender-detection-70-duplicat
git switch main
git merge --ff-only claude/wi-019e535b-deduplicate-sender-detection-70-duplicat
git switch main
git merge claude/wi-019e535b-deduplicate-sender-detection-70-duplicat
git push origin main
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toasterson/sia!7
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